Package: IONiseR 2.13.1
IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data
IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.
Authors:
IONiseR_2.13.1.tar.gz
IONiseR_2.13.1.zip(r-4.5)IONiseR_2.13.1.zip(r-4.4)IONiseR_2.13.1.zip(r-4.3)
IONiseR_2.13.1.tgz(r-4.4-any)IONiseR_2.13.1.tgz(r-4.3-any)
IONiseR_2.13.1.tar.gz(r-4.5-noble)IONiseR_2.13.1.tar.gz(r-4.4-noble)
IONiseR_2.13.1.tgz(r-4.4-emscripten)IONiseR_2.13.1.tgz(r-4.3-emscripten)
IONiseR.pdf |IONiseR.html✨
IONiseR/json (API)
NEWS
| # Install 'IONiseR' in R: |
| install.packages('IONiseR', repos = c('https://grimbough.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/grimbough/ioniser/issues
On BioConductor:IONiseR-2.31.0(bioc 3.21)IONiseR-2.30.0(bioc 3.20)
qualitycontroldataimportsequencing
Last updated 4 years agofrom:47d8ab1e1d. Checks:OK: 1 WARNING: 1 NOTE: 5. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win | NOTE | Nov 06 2024 |
| R-4.5-linux | WARNING | Nov 06 2024 |
| R-4.4-win | NOTE | Nov 06 2024 |
| R-4.4-mac | NOTE | Nov 06 2024 |
| R-4.3-win | NOTE | Nov 06 2024 |
| R-4.3-mac | NOTE | Oct 07 2024 |
Exports:baseCalledchannelActivityPlotchannelHeatmapeventDatafast5toFastqfastqfastq2DfastqComplementfastqTemplatelayoutPlotplotActiveChannelsplotBaseProductionRateplotCurrentByTimeplotEventRateplotKmerFrequencyCorrelationplotReadAccumulationplotReadCategoryCountsplotReadCategoryQualsplotReadTypeProductionreadFast5LogreadFast5SummaryreadInfo
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsclicodetoolscolorspacecpp11crayoncurlDelayedArraydeldirdplyrfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehttrhwriterinterpIRangesisobandjpegjsonlitelabelinglambda.rlatticelatticeExtralifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpngpurrrpwalignR6RColorBrewerRcppRcppEigenrhdf5rhdf5filtersRhdf5libRhtslibrlangRsamtoolsS4ArraysS4VectorsscalesShortReadsnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
