Package: Rarr 1.5.2

Rarr: Read Zarr Files in R

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

Authors:Mike Smith [aut, cre]

Rarr_1.5.2.tar.gz
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Rarr_1.5.2.tgz(r-4.4-x86_64)Rarr_1.5.2.tgz(r-4.4-arm64)Rarr_1.5.2.tgz(r-4.3-x86_64)Rarr_1.5.2.tgz(r-4.3-arm64)
Rarr_1.5.2.tar.gz(r-4.5-noble)Rarr_1.5.2.tar.gz(r-4.4-noble)
Rarr.pdf |Rarr.html
Rarr/json (API)
NEWS

# Install 'Rarr' in R:
install.packages('Rarr', repos = c('https://grimbough.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/grimbough/rarr/issues

Uses libs:
  • c-blosc– High performance meta-compressor optimized for binary data
  • libzstd– Fast lossless compression algorithm

On BioConductor:Rarr-1.5.1(bioc 3.20)Rarr-1.4.0(bioc 3.19)

dataimportome-zarron-diskout-of-memoryzarr

17 exports 31 stars 6.32 score 39 dependencies 17 scripts

Last updated 8 days agofrom:31dd0f4ba2. Checks:OK: 1 WARNING: 8. Indexed: no.

TargetResultDate
Doc / VignettesOKSep 27 2024
R-4.5-win-x86_64WARNINGSep 27 2024
R-4.5-linux-x86_64WARNINGSep 27 2024
R-4.4-win-x86_64WARNINGSep 27 2024
R-4.4-mac-x86_64WARNINGSep 27 2024
R-4.4-mac-aarch64WARNINGSep 27 2024
R-4.3-win-x86_64WARNINGSep 27 2024
R-4.3-mac-x86_64WARNINGSep 27 2024
R-4.3-mac-aarch64WARNINGSep 27 2024

Exports:chunkdimcoercecreate_empty_zarr_arrayread_zarr_arraytypeupdate_zarr_arrayuse_bloscuse_bz2use_gzipuse_lz4use_lzmause_zlibuse_zstdwrite_zarr_arraywriteZarrArrayzarr_overviewZarrArray

Dependencies:abindaskpassbase64encBiocGenericsclicrayoncurlDelayedArraydigestgluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpaws.commonpaws.storageR.methodsS3R.ooR.utilsR6RcpprlangS4ArraysS4VectorsSparseArraystringistringrsysvctrsxml2XVectorzlibbioc

Reading Zarr arrays with Rarr

Rendered fromRarr.Rmdusingknitr::rmarkdownon Sep 27 2024.

Last update: 2024-09-06
Started: 2023-01-23